Amok [ 2024 ]

Software for motif discovery and next generation sequencing analysis

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and ChIP-Seq analysis. It is a collection of command line programs for unix-style operating systems written in mostly perl and c++. Homer was primarily written as a de novo motif discovery algorithm that is well suited for finding 8-12 bp motifs in large scale genomics data.

Hardware Requirements (recommended): 2+ Gb memory (4-8+ Gb), 10+ Gb Hard Drive space (50+ Gb)
Software Requirements: Unix compatible OS (or cygwin), perl, gcc, make, wget (optional for full functionality: R, DESeq2, blat, bedGraphToBigWig, liftOver)
License: GPLv3

HOMER works on pretty much any Linux/UNIX systems, including MacOS (if Xcode compilers are installed) and on Windows using either cygwin or a Linux subsystem.

If you are looking specifically for HOMER2, you are in the right place! HOMER2 is integrated into HOMER.

Full Program Download

Amok [ 2024 ]

Check out the full recipe here if you want to try it yourself!

If you're looking to share your love for , the iconic national dish of Cambodia, here are a few post ideas depending on whether you're dining out, cooking at home, or just appreciating the culture. 🇰🇭 Option 1: The Foodie Appreciation Post

🥥🐠. There's something so special about that silky, mousse-like texture and the fragrant blend of lemongrass, galangal, and kaffir lime. Traditionally served in a banana leaf basket, it’s a true royal Khmer experience! Check out the full recipe here if you

#Amok #CambodianFood #KhmerCuisine #SiemReapEats #FoodieDiscovery" 🍳 Option 2: The Home Cook/Recipe Post

#HomeCooking #AmokTrey #CambodianRecipes #FishCurry #AsianCuisine" 🌱 Option 3: The Vegan/Alternative Post Great for highlighting modern takes, like the Aubergine Amok or . "Vegan Amok ? Yes, please! 🍆✨ There's something so special about that silky, mousse-like

Have you tried Cambodia's national dish yet? Let me know your favorite spot to grab it! 👇

Perfect for when you’re at a restaurant like Amok by Chef Kimsan in Siem Reap. "Nothing says Cambodia like a perfectly steamed "Vegan Amok

Ask your followers if they prefer the traditional or versions with Chicken or Snail .

Program Components and Older Versions

homer2 program - key executable for HOMER motif discovery (homerCppOnly.*.zip). (This archive actually contains all of the c++ executable, not just homer2). Unzip in the desired directory and simply type "make" to compile the program.

The configuration script really doesn't deal with older versions, but you can download older versions yourself should you really feel like using inferior data or software!

Old Versions of HOMER Software
Old Versions of Organism Packages
Old Versions of Promoter Packages
Old Versions of Genome Packages

Update Information

Change Log - Short description of recent changes

update.txt - Current HOMER configuration list (Currently support human hg17/hg18/hg19, mouse mm8/mm9, rat rn4, X. tropicalis xenTro2, drosophila dm3, and C. elegans ce6, Zebrafish danRer7, yeast sacCer2, Arabidopsis tair10, Rice msu6, Pombe ASM294v1)

Can't figure something out? Questions, comments, concerns, or other feedback:
cbenner@ucsd.edu